Index

A

allele_ids (cbgen.typing.Variants attribute)

B

bgen_file (class in cbgen)

bgen_metafile (class in cbgen)

C

chromosome (cbgen.typing.Variants attribute) close() (cbgen.bgen_file method) (cbgen.bgen_metafile method)

contain_samples (cbgen.bgen_file property) create_metafile() (cbgen.bgen_file method)

F

filepath (cbgen.bgen_file property) (cbgen.bgen_metafile property)

G

Genotype (class in cbgen.typing)

get() (in module cbgen.example)

I

id (cbgen.typing.Variants attribute)

M

missing (cbgen.typing.Genotype attribute)

N

nalleles (cbgen.typing.Variants attribute) npartitions (cbgen.bgen_metafile property)

nsamples (cbgen.bgen_file property) nvariants (cbgen.bgen_file property) (cbgen.bgen_metafile property)

O

offset (cbgen.typing.Partition attribute) (cbgen.typing.Variants attribute)

P

Partition (class in cbgen.typing) partition_size (cbgen.bgen_metafile property) phased (cbgen.typing.Genotype attribute)

ploidy (cbgen.typing.Genotype attribute) position (cbgen.typing.Variants attribute) Probability (cbgen.typing.Genotype attribute)

R

read_genotype() (cbgen.bgen_file method) read_partition() (cbgen.bgen_metafile method)

read_probability() (cbgen.bgen_file method) read_samples() (cbgen.bgen_file method) rsid (cbgen.typing.Variants attribute)

S

size (cbgen.typing.Variants property)

V

variants (cbgen.typing.Partition attribute)

Variants (class in cbgen.typing)